Umap ==== Newmap is intended to be a simple, faster, and easy to use replacement for the original `Umap `_ project. ------------------------ Umap dataset differences ------------------------ There are some minor differences between the file output generated by Umap and newmap. Newmap aims to be an improvement in both usefulness and accuracy. unique.uint8 ^^^^^^^^^^^^ There are minor differences between the ``unique.uint8`` datasets that would have been generated from Umap, and the current datasets generated from newmap. In most cases, only the following k-mer lengths were in Umap unique files: 24,36,50,100,150,200 Mappability files ^^^^^^^^^^^^^^^^^ There are some more significant differences in the mappability files generated: 1. Regions with 0-valued mappability for both single-read and multi-read are now included as 0 values in the resulting files. Previously in Umap, these regions were simply omitted. 2. The mappability files generated by newmap are different from the original Umap by 1 bp on the start coordinate due to an off-by-one bug for both multi-read mappability and single-read mappability in Umap.